Index

_

__init__() (datalad.api.Dataset method)

A

ac (datalad.plugin.check_dates.CheckDates attribute) activate() (datalad.auto.AutomagicIO method) active (datalad.auto.AutomagicIO attribute) add() (datalad.config.ConfigManager method) (datalad.support.annexrepo.AnnexRepo method) (in module datalad.api) add_() (datalad.support.annexrepo.AnnexRepo method) add_archive_content() (in module datalad.api) add_entrypoints_to_interface_groups() (in module datalad.cmdline.main) add_extra_filename_values() (in module datalad.plugin.addurls) add_remote() (datalad.support.annexrepo.AnnexRepo method) add_section() (datalad.customremotes.base.AnnexExchangeProtocol method) add_url_to_file() (datalad.support.annexrepo.AnnexRepo method) add_urls() (datalad.support.annexrepo.AnnexRepo method) AddReadme (class in datalad.plugin.add_readme) AddReadme.EnsureDataset (class in datalad.plugin.add_readme) AddReadme.EnsureNone (class in datalad.plugin.add_readme) AddReadme.EnsureStr (class in datalad.plugin.add_readme) AddReadme.Parameter (class in datalad.plugin.add_readme) Addurls (class in datalad.plugin.addurls) Addurls.EnsureChoice (class in datalad.plugin.addurls) Addurls.EnsureDataset (class in datalad.plugin.addurls) Addurls.EnsureNone (class in datalad.plugin.addurls) Addurls.EnsureStr (class in datalad.plugin.addurls) Addurls.Parameter (class in datalad.plugin.addurls) adjust() (datalad.support.annexrepo.AnnexRepo method) aggregate_metadata() (in module datalad.api) all_same() (in module datalad.utils) annex AnnexCustomRemote (class in datalad.customremotes.base) AnnexExchangeProtocol (class in datalad.customremotes.base) AnnexRemoteQuit AnnexRepo (class in datalad.support.annexrepo) annotate_paths() (in module datalad.api)

any_re_search() (in module datalad.utils) anything2bool() (in module datalad.config) API_URL (datalad.plugin.export_to_figshare.FigshareRESTLaison attribute) ArchiveAnnexCustomRemote (class in datalad.customremotes.archives) ArchivesCache (class in datalad.support.archives) ArgumentParserDisableAbbrev (class in datalad.cmdline.main) as_unicode() (in module datalad.utils) assert_dict_equal() (in module datalad.tests.utils) assert_in_results() (in module datalad.tests.utils) assert_is_generator() (in module datalad.tests.utils) assert_message() (in module datalad.tests.utils) assert_no_errors_logged() (in module datalad.tests.utils) assert_no_open_files() (in module datalad.utils) assert_not_in_results() (in module datalad.tests.utils) assert_re_in() (in module datalad.tests.utils) assert_result_count() (in module datalad.tests.utils) assert_result_values_cond() (in module datalad.tests.utils) assert_result_values_equal() (in module datalad.tests.utils) assert_status() (in module datalad.tests.utils) assert_str_equal() (in module datalad.tests.utils) assure_bool() (in module datalad.utils) assure_bytes() (in module datalad.utils) assure_dict_from_str() (in module datalad.utils) assure_dir() (in module datalad.utils) assure_extracted() (datalad.support.archives.ExtractedArchive method) assure_iter() (in module datalad.utils) assure_list() (in module datalad.utils) assure_list_from_str() (in module datalad.utils) assure_tuple_or_list() (in module datalad.utils) assure_unicode() (in module datalad.utils) auto_repr() (in module datalad.utils) autoget (datalad.auto.AutomagicIO attribute) AutomagicIO (class in datalad.auto) AVAILABILITY (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) (datalad.customremotes.base.AnnexCustomRemote attribute)

B

BasicAnnexTestRepo (class in datalad.tests.utils_testrepos) BasicGitTestRepo (class in datalad.tests.utils_testrepos)

BatchedAnnex (class in datalad.support.annexrepo) BatchedAnnexes (class in datalad.support.annexrepo) better_wraps() (in module datalad.utils)

C

cache (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) call() (datalad.cmd.Runner method) CheckDates (class in datalad.plugin.check_dates) CheckDates.EnsureChoice (class in datalad.plugin.check_dates) CheckDates.EnsureDataset (class in datalad.plugin.check_dates) CheckDates.EnsureNone (class in datalad.plugin.check_dates) CheckDates.EnsureStr (class in datalad.plugin.check_dates) CheckDates.Parameter (class in datalad.plugin.check_dates) chpwd (class in datalad.utils) clean() (datalad.support.archives.ArchivesCache method) (datalad.support.archives.ExtractedArchive method) (in module datalad.api) clean_meta_args() (in module datalad.plugin.addurls) clear() (datalad.support.annexrepo.BatchedAnnexes method) clone() (in module datalad.api) clone_url() (in module datalad.tests.utils) close() (datalad.support.annexrepo.BatchedAnnex method) (datalad.support.annexrepo.BatchedAnnexes method) ColorFormatter (class in datalad.log) commands (datalad.cmd.Runner attribute) commit() (datalad.support.annexrepo.AnnexRepo method) compress_files() (in module datalad.support.archives)

ConfigManager (class in datalad.config) convert_field() (datalad.plugin.addurls.Formatter method) copy_to() (datalad.support.annexrepo.AnnexRepo method) COST (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) (datalad.customremotes.base.AnnexCustomRemote attribute) create() (datalad.tests.utils_testrepos.InnerSubmodule method) (datalad.tests.utils_testrepos.TestRepo method) (in module datalad.api) create_article() (datalad.plugin.export_to_figshare.FigshareRESTLaison method) create_file() (datalad.tests.utils_testrepos.TestRepo method) create_info_file() (datalad.tests.utils_testrepos.BasicAnnexTestRepo method) (datalad.tests.utils_testrepos.BasicGitTestRepo method) create_sibling() (in module datalad.api) create_sibling_github() (in module datalad.api) create_test_dataset() (in module datalad.api) create_tree() (in module datalad.utils) create_tree_archive() (in module datalad.utils) CUSTOM_REMOTE_NAME (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) (datalad.customremotes.base.AnnexCustomRemote attribute) custom_result_renderer() (datalad.plugin.check_dates.CheckDates static method) (datalad.plugin.wtf.WTF static method) cwd (datalad.cmd.Runner attribute)

D

datalad.auto (module) datalad.cmd (module) datalad.cmd.protocol, [1] datalad.cmd.protocol.prefix, [1] datalad.cmdline.common_args (module) datalad.cmdline.helpers (module) datalad.cmdline.main (module) datalad.config (module) datalad.consts (module) datalad.crawl.cache, [1] datalad.customremotes.archives (module) datalad.customremotes.base (module) datalad.customremotes.main (module) datalad.exc.str.tblimit, [1] datalad.externals.nda.dbserver, [1] datalad.fake-dates, [1] datalad.fake-dates-start, [1] datalad.locations.cache, [1] datalad.locations.dataset-procedures, [1] datalad.locations.default-dataset, [1] datalad.locations.system-plugins, [1] datalad.locations.system-procedures, [1] datalad.locations.user-plugins, [1] datalad.locations.user-procedures, [1] datalad.log (module) datalad.log.level, [1] datalad.log.name, [1] datalad.log.names, [1] datalad.log.namesre, [1] datalad.log.outputs, [1] datalad.log.timestamp, [1] datalad.log.traceback, [1] datalad.metadata.create-aggregate-annex-limit, [1] datalad.metadata.maxfieldsize, [1] datalad.metadata.nativetype, [1] datalad.metadata.store-aggregate-content, [1] datalad.plugin.add_readme (module) datalad.plugin.addurls (module) datalad.plugin.check_dates (module) datalad.plugin.export_archive (module) datalad.plugin.export_to_figshare (module) datalad.plugin.no_annex (module) datalad.plugin.wtf (module) datalad.repo.direct, [1] datalad.repo.version, [1] datalad.runtime.raiseonerror, [1] datalad.runtime.report-status, [1] datalad.search.default-mode, [1]

datalad.search.index-default-documenttype, [1] datalad.search.indexercachesize, [1] datalad.support.annexrepo (module) datalad.support.archives (module) datalad.support.configparserinc (module) datalad.tests.dataladremote, [1] datalad.tests.heavyoutput (module) datalad.tests.knownfailures.probe, [1] datalad.tests.knownfailures.skip, [1] datalad.tests.nonetwork, [1] datalad.tests.nonlo, [1] datalad.tests.noteardown, [1] datalad.tests.protocolremote, [1] datalad.tests.runcmdline, [1] datalad.tests.ssh, [1] datalad.tests.temp.dir, [1] datalad.tests.temp.fs, [1] datalad.tests.temp.fssize, [1] datalad.tests.temp.keep, [1] datalad.tests.ui.backend, [1] datalad.tests.usecassette, [1] datalad.tests.utils (module) datalad.tests.utils_testrepos (module) datalad.utils (module) datalad.version (module) dataset Dataset (class in datalad.api) datasetmethod() (datalad.plugin.add_readme.AddReadme method) (datalad.plugin.addurls.Addurls method) (datalad.plugin.check_dates.CheckDates method) (datalad.plugin.export_archive.ExportArchive method) (datalad.plugin.export_to_figshare.ExportToFigshare method) (datalad.plugin.no_annex.NoAnnex method) (datalad.plugin.wtf.WTF method) deactivate() (datalad.auto.AutomagicIO method) debug() (datalad.customremotes.base.AnnexCustomRemote method) decode_input() (in module datalad.utils) decompress_file() (in module datalad.support.archives) default_backends (datalad.support.annexrepo.AnnexRepo attribute) diff() (in module datalad.api) disable_logger() (in module datalad.utils) dlabspath() (in module datalad.utils) do_execute_callables (datalad.customremotes.base.AnnexExchangeProtocol attribute) do_execute_ext_commands (datalad.customremotes.base.AnnexExchangeProtocol attribute) download_url() (in module datalad.api) drop() (datalad.support.annexrepo.AnnexRepo method) (in module datalad.api) drop_key() (datalad.support.annexrepo.AnnexRepo method) dry (datalad.cmd.Runner attribute)

E

enable_remote() (datalad.support.annexrepo.AnnexRepo method) encode_filename() (in module datalad.utils) end_section() (datalad.customremotes.base.AnnexExchangeProtocol method) env (datalad.cmd.Runner attribute) environment variable PATH, [1] error() (datalad.customremotes.base.AnnexCustomRemote method) escape_filename() (in module datalad.utils) eval_results() (datalad.plugin.add_readme.AddReadme method) (datalad.plugin.addurls.Addurls method) (datalad.plugin.check_dates.CheckDates method) (datalad.plugin.export_archive.ExportArchive method) (datalad.plugin.export_to_figshare.ExportToFigshare method) (datalad.plugin.no_annex.NoAnnex method) (datalad.plugin.wtf.WTF method)

expandpath() (in module datalad.utils) ExportArchive (class in datalad.plugin.export_archive) ExportArchive.EnsureDataset (class in datalad.plugin.export_archive) ExportArchive.EnsureNone (class in datalad.plugin.export_archive) ExportArchive.EnsureStr (class in datalad.plugin.export_archive) ExportArchive.Parameter (class in datalad.plugin.export_archive) ExportToFigshare (class in datalad.plugin.export_to_figshare) ExportToFigshare.EnsureDataset (class in datalad.plugin.export_to_figshare) ExportToFigshare.EnsureInt (class in datalad.plugin.export_to_figshare) ExportToFigshare.EnsureNone (class in datalad.plugin.export_to_figshare) ExportToFigshare.EnsureStr (class in datalad.plugin.export_to_figshare) ExportToFigshare.Parameter (class in datalad.plugin.export_to_figshare) extract() (in module datalad.plugin.addurls) extract_metadata() (in module datalad.api) ExtractedArchive (class in datalad.support.archives)

F

fail_with_short_help() (in module datalad.cmdline.main) FigshareRESTLaison (class in datalad.plugin.export_to_figshare) File (class in datalad.utils) file_basename() (in module datalad.utils) file_has_content() (datalad.support.annexrepo.AnnexRepo method) filter_legal_metafield() (in module datalad.plugin.addurls) find() (datalad.support.annexrepo.AnnexRepo method) find_files() (in module datalad.utils)

finish() (datalad.support.annexrepo.ProcessAnnexProgressIndicators method) fmt_to_name() (in module datalad.plugin.addurls) format() (datalad.log.ColorFormatter method) (datalad.plugin.addurls.Formatter method) (datalad.plugin.addurls.RepFormatter method) format_element() (datalad.utils.SequenceFormatter method) format_field() (datalad.utils.SequenceFormatter method) Formatter (class in datalad.plugin.addurls) fsck() (datalad.support.annexrepo.AnnexRepo method)

G

generate_chunks() (in module datalad.utils) generate_uuids() (in module datalad.customremotes.base) get() (datalad.config.ConfigManager method) (datalad.plugin.export_to_figshare.FigshareRESTLaison method) (datalad.support.annexrepo.AnnexRepo method) (datalad.support.annexrepo.BatchedAnnexes method) (in module datalad.api) get_annexed_files() (datalad.support.annexrepo.AnnexRepo method) get_archive() (datalad.support.archives.ArchivesCache method) get_article_ids() (datalad.plugin.export_to_figshare.FigshareRESTLaison method) get_autodoc() (datalad.plugin.add_readme.AddReadme.Parameter method) (datalad.plugin.addurls.Addurls.Parameter method) (datalad.plugin.check_dates.CheckDates.Parameter method) (datalad.plugin.export_archive.ExportArchive.Parameter method) (datalad.plugin.export_to_figshare.ExportToFigshare.Parameter method) (datalad.plugin.no_annex.NoAnnex.Parameter method) (datalad.plugin.wtf.WTF.Parameter method) get_commands_from_groups() (in module datalad.cmdline.main) get_contentlocation() (datalad.customremotes.base.AnnexCustomRemote method) (datalad.support.annexrepo.AnnexRepo method) get_corresponding_branch() (datalad.support.annexrepo.AnnexRepo method) get_dataset_pwds() (in module datalad.utils) get_dataset_root() (in module datalad.utils) get_datasets_topdir() (in module datalad.tests.utils) get_description() (datalad.support.annexrepo.AnnexRepo method) get_description_with_cmd_summary() (in module datalad.cmdline.main) get_DIRHASH() (datalad.customremotes.base.AnnexCustomRemote method) get_encoding_info() (in module datalad.utils) get_envvars_info() (in module datalad.utils) get_extracted_file() (datalad.support.archives.ExtractedArchive method) get_extracted_filename() (datalad.support.archives.ExtractedArchive method) get_extracted_files() (datalad.support.archives.ExtractedArchive method) get_file_backend() (datalad.support.annexrepo.AnnexRepo method) get_file_key() (datalad.support.annexrepo.AnnexRepo method) get_file_parts() (in module datalad.plugin.addurls) get_file_size() (datalad.support.annexrepo.AnnexRepo method) get_file_url() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) get_fmt_names() (in module datalad.plugin.addurls) get_func_kwargs_doc() (in module datalad.utils) get_function_nargs() (in module datalad.customremotes.base)

get_git_environ_adjusted() (datalad.cmd.GitRunner static method) get_git_version() (in module datalad.config) get_groupwanted() (datalad.support.annexrepo.AnnexRepo method) get_ipython_shell() (in module datalad.utils) get_key_backend() (datalad.support.annexrepo.AnnexRepo class method) get_leading_directory() (datalad.support.archives.ExtractedArchive method) get_logfilename() (in module datalad.utils) get_max_path_length() (in module datalad.plugin.wtf) get_metadata() (datalad.support.annexrepo.AnnexRepo method) get_most_obscure_supported_name() (in module datalad.tests.utils) get_mtimes_and_digests() (in module datalad.tests.utils) get_open_files() (in module datalad.utils) get_path_prefix() (in module datalad.utils) get_preferred_content() (datalad.support.annexrepo.AnnexRepo method) get_remotes() (datalad.support.annexrepo.AnnexRepo method) get_repo_instance() (in module datalad.cmdline.helpers) get_runner() (in module datalad.cmd) get_size_from_key() (datalad.support.annexrepo.AnnexRepo static method) get_special_remotes() (datalad.support.annexrepo.AnnexRepo method) get_status() (datalad.support.annexrepo.AnnexRepo method) get_subpaths() (in module datalad.plugin.addurls) get_tempfile_kwargs() (in module datalad.utils) get_timestamp_suffix() (in module datalad.utils) get_toppath() (datalad.support.annexrepo.AnnexRepo class method) get_trace() (in module datalad.utils) get_tracking_branch() (datalad.support.annexrepo.AnnexRepo method) get_url_parts() (in module datalad.plugin.addurls) get_URLS() (datalad.customremotes.base.AnnexCustomRemote method) get_urls() (datalad.support.annexrepo.AnnexRepo method) get_value() (datalad.config.ConfigManager method) (datalad.plugin.addurls.Formatter method) (datalad.plugin.addurls.RepFormatter method) getbool() (datalad.config.ConfigManager method) getfloat() (datalad.config.ConfigManager method) getIncludes() (datalad.support.configparserinc.SafeConfigParserWithIncludes static method) getint() (datalad.config.ConfigManager method) getpwd() (in module datalad.utils) GIT_ANNEX_MIN_VERSION (datalad.support.annexrepo.AnnexRepo attribute) git_annex_version (datalad.support.annexrepo.AnnexRepo attribute) GitRunner (class in datalad.cmd)

H

has_option() (datalad.config.ConfigManager method) has_section() (datalad.config.ConfigManager method) HEADER (datalad.customremotes.base.AnnexExchangeProtocol attribute)

heavydebug() (datalad.customremotes.base.AnnexCustomRemote method) HelpAction (class in datalad.cmdline.helpers) HTTPPath (class in datalad.tests.utils)

I

ignore_nose_capturing_stdout() (in module datalad.tests.utils) import_module_from_file() (in module datalad.utils) import_modules() (in module datalad.utils) info() (datalad.customremotes.base.AnnexCustomRemote method) (datalad.support.annexrepo.AnnexRepo method) init_datalad_remote() (in module datalad.customremotes.base) init_remote() (datalad.support.annexrepo.AnnexRepo method) initiate() (datalad.customremotes.base.AnnexExchangeProtocol method) InnerSubmodule (class in datalad.tests.utils_testrepos) install() (in module datalad.api) integration() (in module datalad.tests.utils) is_available() (datalad.support.annexrepo.AnnexRepo method)

is_crippled_fs() (datalad.support.annexrepo.AnnexRepo method) is_direct_mode() (datalad.support.annexrepo.AnnexRepo method) is_dirty() (datalad.support.annexrepo.AnnexRepo method) is_explicit_path() (in module datalad.utils) is_extracted (datalad.support.archives.ExtractedArchive attribute) is_interactive() (in module datalad.utils) is_legal_metafield() (in module datalad.plugin.addurls) is_managed_branch() (datalad.support.annexrepo.AnnexRepo method) is_remote_annex_ignored() (datalad.support.annexrepo.AnnexRepo method) is_special_annex_remote() (datalad.support.annexrepo.AnnexRepo method) is_under_annex() (datalad.support.annexrepo.AnnexRepo method) is_valid_repo() (datalad.support.annexrepo.AnnexRepo class method) items() (datalad.config.ConfigManager method)

K

keys() (datalad.config.ConfigManager method) known_failure() (in module datalad.tests.utils) known_failure_direct_mode() (in module datalad.tests.utils)

known_failure_v6() (in module datalad.tests.utils) known_failure_v6_or_later() (in module datalad.tests.utils) known_failure_windows() (in module datalad.tests.utils) knows_annex() (in module datalad.utils)

L

line_profile() (in module datalad.utils) link_file_load() (in module datalad.cmd) lmtime() (in module datalad.utils) lock() (datalad.support.annexrepo.AnnexRepo method) log() (datalad.cmd.Runner method) log_cwd (datalad.cmd.Runner attribute) log_env (datalad.cmd.Runner attribute) log_message() (datalad.tests.utils.SilentHTTPHandler method) log_outputs (datalad.cmd.Runner attribute) log_stdin (datalad.cmd.Runner attribute) LogLevelAction (class in datalad.cmdline.helpers) long_description() (datalad.plugin.add_readme.AddReadme.EnsureDataset method) (datalad.plugin.add_readme.AddReadme.EnsureNone method) (datalad.plugin.add_readme.AddReadme.EnsureStr method) (datalad.plugin.addurls.Addurls.EnsureChoice method) (datalad.plugin.addurls.Addurls.EnsureDataset method) (datalad.plugin.addurls.Addurls.EnsureNone method) (datalad.plugin.addurls.Addurls.EnsureStr method) (datalad.plugin.check_dates.CheckDates.EnsureChoice method) (datalad.plugin.check_dates.CheckDates.EnsureDataset method) (datalad.plugin.check_dates.CheckDates.EnsureNone method) (datalad.plugin.check_dates.CheckDates.EnsureStr method) (datalad.plugin.export_archive.ExportArchive.EnsureDataset method) (datalad.plugin.export_archive.ExportArchive.EnsureNone method) (datalad.plugin.export_archive.ExportArchive.EnsureStr method) (datalad.plugin.export_to_figshare.ExportToFigshare.EnsureDataset method) (datalad.plugin.export_to_figshare.ExportToFigshare.EnsureNone method) (datalad.plugin.export_to_figshare.ExportToFigshare.EnsureStr method) (datalad.plugin.no_annex.NoAnnex.EnsureDataset method) (datalad.plugin.no_annex.NoAnnex.EnsureNone method) (datalad.plugin.wtf.WTF.EnsureChoice method) (datalad.plugin.wtf.WTF.EnsureDataset method) (datalad.plugin.wtf.WTF.EnsureNone method)

ls() (in module datalad.api)

M

main() (datalad.customremotes.base.AnnexCustomRemote method) (in module datalad.cmdline.main) (in module datalad.customremotes.archives) (in module datalad.customremotes.main) make_tempfile() (in module datalad.utils)

map_items() (in module datalad.utils) md5sum() (in module datalad.utils) merge_annex() (datalad.support.annexrepo.AnnexRepo method) metadata() (in module datalad.api) migrate_backend() (datalad.support.annexrepo.AnnexRepo method)

N

NestedDataset (class in datalad.tests.utils_testrepos) NoAnnex (class in datalad.plugin.no_annex) NoAnnex.EnsureDataset (class in datalad.plugin.no_annex) NoAnnex.EnsureNone (class in datalad.plugin.no_annex)

NoAnnex.Parameter (class in datalad.plugin.no_annex) nok_startswith() (in module datalad.tests.utils) not_supported_on_windows() (in module datalad.utils) nothing_cm() (in module datalad.utils)

O

obtain() (datalad.config.ConfigManager method) ok_annex_get() (in module datalad.tests.utils) ok_archives_caches() (in module datalad.tests.utils) ok_broken_symlink() (in module datalad.tests.utils) ok_clean_git() (in module datalad.tests.utils) ok_endswith() (in module datalad.tests.utils) ok_exists() (in module datalad.tests.utils) ok_file_has_content() (in module datalad.tests.utils)

ok_file_under_git() (in module datalad.tests.utils) ok_generator() (in module datalad.tests.utils) ok_git_config_not_empty() (in module datalad.tests.utils) ok_good_symlink() (in module datalad.tests.utils) ok_startswith() (in module datalad.tests.utils) ok_symlink() (in module datalad.tests.utils) open_r_encdetect() (in module datalad.utils) optional_args() (in module datalad.utils) options() (datalad.config.ConfigManager method)

P

parser_add_common_opt() (in module datalad.cmdline.helpers) partition() (in module datalad.utils) patch_config() (in module datalad.tests.utils) PATH, [1] path (datalad.support.archives.ArchivesCache attribute) (datalad.support.archives.ExtractedArchive attribute) (datalad.tests.utils_testrepos.InnerSubmodule attribute) (datalad.tests.utils_testrepos.TestRepo attribute) path_is_subpath() (in module datalad.utils) path_startswith() (in module datalad.utils) populate() (datalad.tests.utils_testrepos.BasicAnnexTestRepo method) (datalad.tests.utils_testrepos.BasicGitTestRepo method) (datalad.tests.utils_testrepos.NestedDataset method) (datalad.tests.utils_testrepos.SubmoduleDataset method) (datalad.tests.utils_testrepos.TestRepo method)

posix_relpath() (in module datalad.utils) post() (datalad.plugin.export_to_figshare.FigshareRESTLaison method) precommit() (datalad.support.annexrepo.AnnexRepo method) probe_known_failure() (in module datalad.tests.utils) ProcessAnnexProgressIndicators (class in datalad.support.annexrepo) progress() (datalad.customremotes.base.AnnexCustomRemote method) protocol (datalad.cmd.Runner attribute) proxy() (datalad.support.annexrepo.AnnexRepo method) publish() (in module datalad.api) put() (datalad.plugin.export_to_figshare.FigshareRESTLaison method) put_file_under_git() (in module datalad.tests.utils)

R

read() (datalad.customremotes.base.AnnexCustomRemote method) (datalad.support.configparserinc.SafeConfigParserWithIncludes method) read_csv_lines() (in module datalad.utils) readline_json() (in module datalad.support.annexrepo) readline_rstripped() (in module datalad.support.annexrepo) readlines_until_ok_or_failed() (in module datalad.support.annexrepo) records_callables (datalad.customremotes.base.AnnexExchangeProtocol attribute) records_ext_commands (datalad.customremotes.base.AnnexExchangeProtocol attribute) reload() (datalad.config.ConfigManager method) remove() (datalad.support.annexrepo.AnnexRepo method) (in module datalad.api) remove_section() (datalad.config.ConfigManager method) rename_section() (datalad.config.ConfigManager method) RepFormatter (class in datalad.plugin.addurls) REPO_CLASS (datalad.tests.utils_testrepos.BasicAnnexTestRepo attribute) (datalad.tests.utils_testrepos.BasicGitTestRepo attribute) (datalad.tests.utils_testrepos.TestRepo attribute) repo_info() (datalad.support.annexrepo.AnnexRepo method) req_CHECKPRESENT() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.customremotes.base.AnnexCustomRemote method) req_CHECKURL() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.customremotes.base.AnnexCustomRemote method) req_CLAIMURL() (datalad.customremotes.base.AnnexCustomRemote method) req_EXPORTSUPPORTED() (datalad.customremotes.base.AnnexCustomRemote method)

req_GETAVAILABILITY() (datalad.customremotes.base.AnnexCustomRemote method) req_GETCOST() (datalad.customremotes.base.AnnexCustomRemote method) req_INITREMOTE() (datalad.customremotes.base.AnnexCustomRemote method) req_PREPARE() (datalad.customremotes.base.AnnexCustomRemote method) req_REMOVE() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.customremotes.base.AnnexCustomRemote method) req_TRANSFER() (datalad.customremotes.base.AnnexCustomRemote method) req_WHEREIS() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.customremotes.base.AnnexCustomRemote method) rerun() (in module datalad.api) result_renderer (datalad.plugin.check_dates.CheckDates attribute) (datalad.plugin.wtf.WTF attribute) RFC RFC 822 rm_url() (datalad.support.annexrepo.AnnexRepo method) rmdir() (in module datalad.utils) rmtemp() (in module datalad.utils) rmtree() (in module datalad.utils) rotree() (in module datalad.utils) run() (datalad.cmd.GitRunner method) (datalad.cmd.Runner method) (in module datalad.api) run_procedure() (in module datalad.api) run_via_pbs() (in module datalad.cmdline.helpers) Runner (class in datalad.cmd)

S

safe_print() (in module datalad.utils) SafeConfigParserWithIncludes (class in datalad.support.configparserinc) save() (in module datalad.api) saved_generator() (in module datalad.utils) search() (in module datalad.api) SECTION_NAME (datalad.support.configparserinc.SafeConfigParserWithIncludes attribute) sections() (datalad.config.ConfigManager method) send() (datalad.customremotes.base.AnnexCustomRemote method) send_unsupported() (datalad.customremotes.base.AnnexCustomRemote method) SequenceFormatter (class in datalad.utils) set() (datalad.config.ConfigManager method) set_date() (in module datalad.tests.utils) set_default_backend() (datalad.support.annexrepo.AnnexRepo method) set_direct_mode() (datalad.support.annexrepo.AnnexRepo method) set_groupwanted() (datalad.support.annexrepo.AnnexRepo method) set_metadata() (datalad.support.annexrepo.AnnexRepo method) set_preferred_content() (datalad.support.annexrepo.AnnexRepo method) set_remote_dead() (datalad.support.annexrepo.AnnexRepo method) set_remote_url() (datalad.support.annexrepo.AnnexRepo method) setup_exceptionhook() (in module datalad.utils) setup_parser() (in module datalad.cmdline.main) (in module datalad.customremotes.main) short_description() (datalad.plugin.add_readme.AddReadme.EnsureDataset method) (datalad.plugin.add_readme.AddReadme.EnsureNone method) (datalad.plugin.add_readme.AddReadme.EnsureStr method) (datalad.plugin.addurls.Addurls.EnsureChoice method) (datalad.plugin.addurls.Addurls.EnsureDataset method) (datalad.plugin.addurls.Addurls.EnsureNone method) (datalad.plugin.addurls.Addurls.EnsureStr method) (datalad.plugin.check_dates.CheckDates.EnsureChoice method) (datalad.plugin.check_dates.CheckDates.EnsureDataset method) (datalad.plugin.check_dates.CheckDates.EnsureNone method) (datalad.plugin.check_dates.CheckDates.EnsureStr method) (datalad.plugin.export_archive.ExportArchive.EnsureDataset method) (datalad.plugin.export_archive.ExportArchive.EnsureNone method) (datalad.plugin.export_archive.ExportArchive.EnsureStr method) (datalad.plugin.export_to_figshare.ExportToFigshare.EnsureDataset method) (datalad.plugin.export_to_figshare.ExportToFigshare.EnsureNone method) (datalad.plugin.export_to_figshare.ExportToFigshare.EnsureStr method) (datalad.plugin.no_annex.NoAnnex.EnsureDataset method) (datalad.plugin.no_annex.NoAnnex.EnsureNone method) (datalad.plugin.wtf.WTF.EnsureChoice method) (datalad.plugin.wtf.WTF.EnsureDataset method) (datalad.plugin.wtf.WTF.EnsureNone method)

shortened_repr() (in module datalad.utils) sibling siblings() (in module datalad.api) SilentHTTPHandler (class in datalad.tests.utils) skip_httpretty_on_problematic_pythons() (in module datalad.tests.utils) skip_if_no_module() (in module datalad.tests.utils) skip_if_no_network() (in module datalad.tests.utils) skip_if_on_windows() (in module datalad.tests.utils) skip_if_scrapy_without_selector() (in module datalad.tests.utils) skip_if_url_is_not_available() (in module datalad.tests.utils) skip_ssh() (in module datalad.tests.utils) slash_join() (in module datalad.utils) slow() (in module datalad.tests.utils) sorted_files() (in module datalad.utils) sshrun() (in module datalad.api) stamp_path (datalad.support.archives.ExtractedArchive attribute) STAMP_SUFFIX (datalad.support.archives.ExtractedArchive attribute) start() (datalad.support.annexrepo.ProcessAnnexProgressIndicators method) (datalad.tests.utils.HTTPPath method) start_section() (datalad.customremotes.base.AnnexExchangeProtocol method) stop() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.customremotes.base.AnnexCustomRemote method) (datalad.tests.utils.HTTPPath method) strip_arg_from_argv() (in module datalad.cmdline.helpers) subdataset subdatasets() (in module datalad.api) SubmoduleDataset (class in datalad.tests.utils_testrepos) superdataset SUPPORTED_SCHEMES (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) (datalad.customremotes.base.AnnexCustomRemote attribute) supports_unlocked_pointers (datalad.support.annexrepo.AnnexRepo attribute) swallow_logs() (in module datalad.utils) swallow_outputs() (in module datalad.utils) sync() (datalad.support.annexrepo.AnnexRepo method)

T

test() (in module datalad.api) TestRepo (class in datalad.tests.utils_testrepos)

token (datalad.plugin.export_to_figshare.FigshareRESTLaison attribute) try_multiple() (in module datalad.utils) try_multiple_dec() (in module datalad.utils)

U

unannex() (datalad.support.annexrepo.AnnexRepo method) uninstall() (in module datalad.api) unique() (in module datalad.utils) unixify_path() (in module datalad.support.archives) unlink() (in module datalad.utils) unlock() (datalad.support.annexrepo.AnnexRepo method) (in module datalad.api) unset() (datalad.config.ConfigManager method) untracked_files (datalad.support.annexrepo.AnnexRepo attribute)

update() (in module datalad.api) updated() (in module datalad.utils) upload_file() (datalad.plugin.export_to_figshare.FigshareRESTLaison method) url (datalad.tests.utils_testrepos.InnerSubmodule attribute) (datalad.tests.utils_testrepos.TestRepo attribute) URL_PREFIX (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) URL_SCHEME (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) usecase() (in module datalad.tests.utils) uuid (datalad.support.annexrepo.AnnexRepo attribute)

W

WEB_UUID (datalad.support.annexrepo.AnnexRepo attribute) whereis() (datalad.support.annexrepo.AnnexRepo method) with_pathsep() (in module datalad.utils) write_entries() (datalad.customremotes.base.AnnexExchangeProtocol method) write_section() (datalad.customremotes.base.AnnexExchangeProtocol method)

WTF (class in datalad.plugin.wtf) WTF.EnsureChoice (class in datalad.plugin.wtf) WTF.EnsureDataset (class in datalad.plugin.wtf) WTF.EnsureNone (class in datalad.plugin.wtf) WTF.Parameter (class in datalad.plugin.wtf)