Index

_

__init__() (datalad.api.Dataset method)

A

add() (datalad.config.ConfigManager method) (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) add_() (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) add_archive_content() (in module datalad.api) add_fake_dates() (datalad.support.gitrepo.GitRepo method) add_readme() (in module datalad.api) add_remote() (datalad.support.gitrepo.GitRepo method) add_subparser() (in module datalad.cli.parser) add_to_output() (datalad.support.annexrepo.AnnexJsonProtocol method) (datalad.support.annexrepo.GeneratorAnnexJsonProtocol method) add_url_to_file() (datalad.support.annexrepo.AnnexRepo method) add_urls() (datalad.support.annexrepo.AnnexRepo method) addurls() (in module datalad.api) adjust() (datalad.support.annexrepo.AnnexRepo method) alter_interface_docs_for_api() (in module datalad.interface.base) annex AnnexCustomRemote (class in datalad.customremotes.base) AnnexInitOutput (class in datalad.support.annexrepo) AnnexJsonProtocol (class in datalad.support.annexrepo) AnnexRepo (class in datalad.support.annexrepo) annexstatus() (datalad.support.annexrepo.AnnexRepo method) any_re_search() (in module datalad.utils) anything2bool() (in module datalad.config) ArchiveAnnexCustomRemote (class in datalad.customremotes.archives) ArchivesCache (class in datalad.support.archives) args (datalad.utils.ArgSpecFake attribute) ArgSpecFake (class in datalad.utils) ArgumentParserDisableAbbrev (class in datalad.cli.parser) assert_cwd_unchanged() (in module datalad.tests.utils_pytest) assert_dict_equal() (in module datalad.tests.utils_pytest) assert_equal() (in module datalad.tests.utils_pytest) assert_false() (in module datalad.tests.utils_pytest) assert_greater() (in module datalad.tests.utils_pytest) assert_greater_equal() (in module datalad.tests.utils_pytest) assert_in() (in module datalad.tests.utils_pytest)

assert_in_results() (in module datalad.tests.utils_pytest) assert_is() (in module datalad.tests.utils_pytest) assert_is_generator() (in module datalad.tests.utils_pytest) assert_is_instance() (in module datalad.tests.utils_pytest) assert_is_none() (in module datalad.tests.utils_pytest) assert_is_not() (in module datalad.tests.utils_pytest) assert_is_not_none() (in module datalad.tests.utils_pytest) assert_logged() (datalad.utils.SwallowLogsAdapter method) assert_message() (in module datalad.tests.utils_pytest) assert_no_errors_logged() (in module datalad.tests.utils_pytest) assert_no_open_files() (in module datalad.utils) assert_not_equal() (in module datalad.tests.utils_pytest) assert_not_in() (in module datalad.tests.utils_pytest) assert_not_in_results() (in module datalad.tests.utils_pytest) assert_not_is_instance() (in module datalad.tests.utils_pytest) assert_re_in() (in module datalad.tests.utils_pytest) assert_repo_status() (in module datalad.tests.utils_pytest) assert_result_count() (in module datalad.tests.utils_pytest) assert_result_values_cond() (in module datalad.tests.utils_pytest) assert_result_values_equal() (in module datalad.tests.utils_pytest) assert_set_equal() (in module datalad.tests.utils_pytest) assert_status() (in module datalad.tests.utils_pytest) assert_str_equal() (in module datalad.tests.utils_pytest) assert_true() (in module datalad.tests.utils_pytest) assure_bool() (in module datalad.utils) assure_bytes() (in module datalad.utils) assure_dict_from_str() (in module datalad.utils) assure_dir() (in module datalad.utils) assure_extracted() (datalad.support.archives.ExtractedArchive method) assure_iter() (in module datalad.utils) assure_list() (in module datalad.utils) assure_list_from_str() (in module datalad.utils) assure_tuple_or_list() (in module datalad.utils) assure_unicode() (in module datalad.utils) attr() (in module datalad.tests.utils_pytest) auto_repr() (in module datalad.utils) AVAILABILITY (datalad.customremotes.base.AnnexCustomRemote attribute)

B

bare (datalad.support.gitrepo.GitRepo property) BasicAnnexTestRepo (class in datalad.tests.utils_testrepos) BasicGitTestRepo (class in datalad.tests.utils_testrepos) BatchedAnnex (class in datalad.support.annexrepo) BatchedAnnexes (class in datalad.support.annexrepo) BatchedCommand (class in datalad.cmd)

BatchedCommandError BatchedCommandProtocol (class in datalad.cmd) BEGIN (datalad.support.gitrepo.GitProgress attribute) build_doc() (in module datalad.interface.base) build_example() (in module datalad.interface.base) bytes2human() (in module datalad.utils)

C

cache (datalad.customremotes.archives.ArchiveAnnexCustomRemote property) call_annex() (datalad.support.annexrepo.AnnexRepo method) call_annex_items_() (datalad.support.annexrepo.AnnexRepo method) call_annex_oneline() (datalad.support.annexrepo.AnnexRepo method) call_annex_records() (datalad.support.annexrepo.AnnexRepo method) call_annex_success() (datalad.support.annexrepo.AnnexRepo method) call_from_parser() (in module datalad.cli.exec) check_dates() (in module datalad.api) check_direct_mode_support() (datalad.support.annexrepo.AnnexRepo class method) check_for_stall() (datalad.runner.nonasyncrunner.ThreadedRunner method) check_not_generatorfunction() (in module datalad.tests.utils_pytest) check_repository_versions() (datalad.support.annexrepo.AnnexRepo class method) check_symlink_capability() (in module datalad.utils) CHECKING_OUT (datalad.support.gitrepo.GitProgress attribute) checkout() (datalad.support.gitrepo.GitRepo method) checkpresent() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) checkurl() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) cherry_pick() (datalad.support.gitrepo.GitRepo method) chpwd (class in datalad.utils) claimurl() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) clean() (datalad.support.archives.ArchivesCache method) (datalad.support.archives.ExtractedArchive method) (in module datalad.api) clean_inactive() (datalad.cmd.BatchedCommand class method) cleanup() (datalad.utils.SwallowLogsAdapter method) (datalad.utils.SwallowOutputsAdapter method) clear() (datalad.support.annexrepo.BatchedAnnexes method) CLI clone() (datalad.support.gitrepo.GitRepo class method) (in module datalad.api) close() (datalad.cmd.BatchedCommand method) (datalad.support.annexrepo.BatchedAnnexes method) close_stdin() (datalad.runner.nonasyncrunner.ThreadedRunner method) collect_method_callstats() (in module datalad.utils)

ColorFormatter (class in datalad.log) commit() (datalad.support.gitrepo.GitRepo method) commit_exists() (datalad.support.gitrepo.GitRepo method) COMPRESSING (datalad.support.gitrepo.GitProgress attribute) config (datalad.support.gitrepo.GitRepo property) ConfigManager (class in datalad.config) configuration() (in module datalad.api) configure_fake_dates() (datalad.support.gitrepo.GitRepo method) connection_lost() (datalad.runner.protocol.WitlessProtocol method) connection_made() (datalad.runner.protocol.WitlessProtocol method) (datalad.support.annexrepo.AnnexJsonProtocol method) (datalad.support.gitrepo.GitProgress method) copy_file() (in module datalad.api) copy_to() (datalad.support.annexrepo.AnnexRepo method) COST (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) (datalad.customremotes.base.AnnexCustomRemote attribute) count_objects (datalad.support.gitrepo.GitRepo property) COUNTING (datalad.support.gitrepo.GitProgress attribute) create() (datalad.tests.utils_testrepos.InnerSubmodule method) (datalad.tests.utils_testrepos.TestRepo method) (in module datalad.api) create_file() (datalad.tests.utils_testrepos.TestRepo method) create_info_file() (datalad.tests.utils_testrepos.BasicAnnexTestRepo method) (datalad.tests.utils_testrepos.BasicGitTestRepo method) create_sibling() (in module datalad.api) create_sibling_gin() (in module datalad.api) create_sibling_gitea() (in module datalad.api) create_sibling_github() (in module datalad.api) create_sibling_gitlab() (in module datalad.api) create_sibling_gogs() (in module datalad.api) create_sibling_ria() (in module datalad.api) create_test_dataset() (in module datalad.api) create_tree() (in module datalad.utils) create_tree_archive() (in module datalad.utils) CUSTOM_REMOTE_NAME (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute)

D

DataLad extension datalad.annex.retry datalad.cli.exec module datalad.cli.main module datalad.cli.parser module datalad.cli.renderer module datalad.clone.url-substitute.github datalad.clone.url-substitute.osf datalad.cmd module datalad.config module datalad.consts module datalad.crawl.cache datalad.credentials.force-ask datalad.credentials.githelper.noninteractive datalad.customremotes.archives module datalad.customremotes.base module datalad.exc.str.tblimit datalad.extensions.load datalad.externals.nda.dbserver datalad.fake-dates datalad.fake-dates-start datalad.github.token-note datalad.install.inherit-local-origin datalad.interface.base module datalad.locations.cache datalad.locations.dataset-procedures datalad.locations.default-dataset datalad.locations.extra-procedures datalad.locations.locks datalad.locations.sockets datalad.locations.system-procedures datalad.locations.user-procedures datalad.log module datalad.log.level datalad.log.name datalad.log.names datalad.log.namesre datalad.log.outputs datalad.log.result-level datalad.log.timestamp datalad.log.traceback datalad.repo.backend datalad.repo.direct datalad.repo.version datalad.runner.nonasyncrunner module datalad.runner.protocol module datalad.runtime.max-annex-jobs datalad.runtime.max-batched datalad.runtime.max-inactive-age datalad.runtime.max-jobs datalad.runtime.pathspec-from-file datalad.runtime.raiseonerror datalad.runtime.report-status datalad.runtime.stalled-external

datalad.save.no-message datalad.save.windows-compat-warning datalad.source.epoch datalad.ssh.executable datalad.ssh.identityfile datalad.ssh.multiplex-connections datalad.ssh.try-use-annex-bundled-git datalad.support.annexrepo module datalad.support.archives module datalad.support.extensions module datalad.support.gitrepo module datalad.tests.cache datalad.tests.credentials datalad.tests.dataladremote datalad.tests.heavyoutput module datalad.tests.knownfailures.probe datalad.tests.knownfailures.skip datalad.tests.nonetwork datalad.tests.nonlo datalad.tests.noteardown datalad.tests.runcmdline datalad.tests.setup.testrepos datalad.tests.ssh datalad.tests.temp.dir datalad.tests.temp.fs datalad.tests.temp.fssize datalad.tests.temp.keep datalad.tests.ui.backend datalad.tests.usecassette datalad.tests.utils_pytest module datalad.tests.utils_testrepos module datalad.ui.color datalad.ui.progressbar datalad.ui.suppress-similar-results datalad.ui.suppress-similar-results-threshold datalad.utils module datalad.version module dataset Dataset (class in datalad.api) decode_input() (in module datalad.utils) decompress_file() (in module datalad.support.archives) dedent_docstring() (in module datalad.interface.base) default_backends (datalad.support.annexrepo.AnnexRepo property) DefaultOutputFormatter (class in datalad.cli.renderer) DefaultOutputRenderer (class in datalad.cli.renderer) defaults (datalad.utils.ArgSpecFake attribute) DELETED (datalad.support.gitrepo.PushInfo attribute) describe() (datalad.support.gitrepo.GitRepo method) diff() (datalad.support.gitrepo.GitRepo method) (in module datalad.api) diffstatus() (datalad.support.gitrepo.GitRepo method) dirty (datalad.support.gitrepo.GitRepo property) disable_logger() (in module datalad.utils) dlabspath() (in module datalad.utils) DONE_TOKEN (datalad.support.gitrepo.GitProgress attribute) download_url() (in module datalad.api) drop() (datalad.support.annexrepo.AnnexRepo method) (in module datalad.api) drop_key() (datalad.support.annexrepo.AnnexRepo method)

E

enable_remote() (datalad.support.annexrepo.AnnexRepo method) encode_filename() (in module datalad.utils) END (datalad.support.gitrepo.GitProgress attribute) ensure_bool() (in module datalad.utils) ensure_bytes() (in module datalad.utils) ensure_datalad_remote() (in module datalad.customremotes.base) ensure_dict_from_str() (in module datalad.utils) ensure_dir() (in module datalad.utils) ensure_iter() (in module datalad.utils) ensure_list() (in module datalad.utils) ensure_list_from_str() (in module datalad.utils) ensure_result_list() (in module datalad.utils) ensure_stdin_stdout_stderr_closed() (datalad.runner.nonasyncrunner.ThreadedRunner method) ensure_stdout_stderr_closed() (datalad.runner.nonasyncrunner.ThreadedRunner method)

ensure_tuple_or_list() (in module datalad.utils) ensure_unicode() (in module datalad.utils) ensure_write_permission() (in module datalad.utils) ENUMERATING (datalad.support.gitrepo.GitProgress attribute) eq_() (in module datalad.tests.utils_pytest) err (datalad.utils.SwallowOutputsAdapter property) ERROR (datalad.support.gitrepo.FetchInfo attribute) (datalad.support.gitrepo.PushInfo attribute) escape_filename() (in module datalad.utils) eval_results() (in module datalad.interface.base) expandpath() (in module datalad.utils) export_archive() (in module datalad.api) export_archive_ora() (in module datalad.api) export_to_figshare() (in module datalad.api) ExtractedArchive (class in datalad.support.archives)

F

fail_with_short_help() (in module datalad.cli.parser) fake_dates_enabled (datalad.support.gitrepo.GitRepo property) FAST_FORWARD (datalad.support.gitrepo.FetchInfo attribute) (datalad.support.gitrepo.PushInfo attribute) fetch() (datalad.support.gitrepo.GitRepo method) fetch_() (datalad.support.gitrepo.GitRepo method) FetchInfo (class in datalad.support.gitrepo) File (class in datalad.utils) file (datalad.support.gitrepo.GitAddOutput attribute) file_basename() (in module datalad.utils) file_has_content() (datalad.support.annexrepo.AnnexRepo method)

filter_noninteractive_progress() (in module datalad.log) find() (datalad.support.annexrepo.AnnexRepo method) find_files() (in module datalad.utils) FINDING_SOURCES (datalad.support.gitrepo.GitProgress attribute) FORCED_UPDATE (datalad.support.gitrepo.FetchInfo attribute) (datalad.support.gitrepo.PushInfo attribute) foreach_dataset() (in module datalad.api) format() (datalad.log.ColorFormatter method) format_commit() (datalad.support.gitrepo.GitRepo method) format_element() (datalad.utils.SequenceFormatter method) format_field() (datalad.utils.SequenceFormatter method) fsck() (datalad.support.annexrepo.AnnexRepo method)

G

gc() (datalad.support.gitrepo.GitRepo method) gen_URLS() (datalad.customremotes.base.AnnexCustomRemote method) generate_chunks() (in module datalad.utils) generate_file_chunks() (in module datalad.utils) generate_uuids() (in module datalad.customremotes.base) GeneratorAnnexJsonNoStderrProtocol (class in datalad.support.annexrepo) GeneratorAnnexJsonProtocol (class in datalad.support.annexrepo) GeneratorMixIn (class in datalad.runner.protocol) get() (datalad.config.ConfigManager method) (datalad.support.annexrepo.AnnexRepo method) (datalad.support.annexrepo.BatchedAnnexes method) (in module datalad.api) get_active_branch() (datalad.support.gitrepo.GitRepo method) get_allargs_as_kwargs() (in module datalad.interface.base) get_annexed_files() (datalad.support.annexrepo.AnnexRepo method) get_annexstatus() (in module datalad.tests.utils_pytest) get_api_name() (in module datalad.interface.base) get_archive() (datalad.support.archives.ArchivesCache method) get_branch_commits_() (datalad.support.gitrepo.GitRepo method) get_branches() (datalad.support.gitrepo.GitRepo method) get_cmd_doc() (in module datalad.interface.base) get_cmd_summaries() (in module datalad.interface.base) get_commit_date() (datalad.support.gitrepo.GitRepo method) get_content_annexinfo() (datalad.support.annexrepo.AnnexRepo method) get_content_info() (datalad.support.gitrepo.GitRepo method) get_contentlocation() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.support.annexrepo.AnnexRepo method) get_convoluted_situation() (in module datalad.tests.utils_pytest) get_corresponding_branch() (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) get_dataset_root() (in module datalad.utils) get_datasets_topdir() (in module datalad.tests.utils_pytest) get_deeply_nested_structure() (in module datalad.tests.utils_pytest) get_description() (datalad.support.annexrepo.AnnexRepo method) get_encoding_info() (in module datalad.utils) get_envvars_info() (in module datalad.utils) get_extracted_file() (datalad.support.archives.ExtractedArchive method) get_extracted_filename() (datalad.support.archives.ExtractedArchive method) get_extracted_files() (datalad.support.archives.ExtractedArchive method) get_file_annexinfo() (datalad.support.annexrepo.AnnexRepo method) get_file_backend() (datalad.support.annexrepo.AnnexRepo method) get_file_key() (datalad.support.annexrepo.AnnexRepo method) get_file_size() (datalad.support.annexrepo.AnnexRepo method) get_file_url() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) get_files() (datalad.support.gitrepo.GitRepo method) get_from_source() (datalad.config.ConfigManager method) get_git_attributes() (datalad.support.gitrepo.GitRepo method) get_git_dir() (datalad.support.gitrepo.GitRepo static method) get_git_version() (in module datalad.config) get_gitattributes() (datalad.support.gitrepo.GitRepo method) get_groupwanted() (datalad.support.annexrepo.AnnexRepo method) get_hexsha() (datalad.support.gitrepo.GitRepo method) get_home_envvars() (in module datalad.utils) get_indexed_files() (datalad.support.gitrepo.GitRepo method) get_initialized_logger() (datalad.log.LoggerHelper method) get_interface_groups() (in module datalad.interface.base)

get_ipython_shell() (in module datalad.utils) get_key_backend() (datalad.support.annexrepo.AnnexRepo class method) get_last_commit_hexsha() (datalad.support.gitrepo.GitRepo method) get_leading_directory() (datalad.support.archives.ExtractedArchive method) get_linux_distribution() (in module datalad.utils) get_logfilename() (in module datalad.utils) get_merge_base() (datalad.support.gitrepo.GitRepo method) get_metadata() (datalad.support.annexrepo.AnnexRepo method) get_most_obscure_supported_name() (in module datalad.tests.utils_pytest) get_mtimes_and_digests() (in module datalad.tests.utils_pytest) get_one_line() (datalad.cmd.BatchedCommand method) get_open_files() (in module datalad.utils) get_path_prefix() (in module datalad.utils) get_preferred_content() (datalad.support.annexrepo.AnnexRepo method) get_refds_path() (datalad.interface.base.Interface class method) get_remote_branches() (datalad.support.gitrepo.GitRepo method) get_remote_url() (datalad.support.gitrepo.GitRepo method) get_remotes() (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) get_requested_error_output() (datalad.cmd.BatchedCommand method) get_revisions() (datalad.support.gitrepo.GitRepo method) get_sig_param_names() (in module datalad.utils) get_size_from_key() (datalad.support.annexrepo.AnnexRepo static method) get_special_remotes() (datalad.support.annexrepo.AnnexRepo method) get_ssh_port() (in module datalad.tests.utils_pytest) get_staged_paths() (datalad.support.gitrepo.GitRepo method) get_submodules() (datalad.support.gitrepo.GitRepo method) get_submodules_() (datalad.support.gitrepo.GitRepo method) get_suggestions_msg() (in module datalad.utils) get_tags() (datalad.support.gitrepo.GitRepo method) get_tempfile_kwargs() (in module datalad.utils) get_timeout_exception() (datalad.cmd.BatchedCommand method) get_timestamp_suffix() (in module datalad.utils) get_toppath() (datalad.support.gitrepo.GitRepo class method) get_trace() (in module datalad.utils) get_tracking_branch() (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) get_urls() (datalad.support.annexrepo.AnnexRepo method) get_value() (datalad.cli.renderer.DefaultOutputFormatter method) (datalad.config.ConfigManager method) get_wrapped_class() (in module datalad.utils) getargspec() (in module datalad.utils) getavailability() (datalad.customremotes.base.AnnexCustomRemote method) getbool() (datalad.config.ConfigManager method) getcost() (datalad.customremotes.base.AnnexCustomRemote method) getfloat() (datalad.config.ConfigManager method) getint() (datalad.config.ConfigManager method) getpwd() (in module datalad.utils) GIT_ANNEX_MIN_VERSION (datalad.support.annexrepo.AnnexRepo attribute) git_annex_version (datalad.support.annexrepo.AnnexRepo attribute) GIT_MIN_VERSION (datalad.support.gitrepo.GitRepo attribute) git_version (datalad.support.gitrepo.GitRepo attribute) GitAddOutput (class in datalad.support.gitrepo) GitProgress (class in datalad.support.gitrepo) GitRepo (class in datalad.support.gitrepo) guard_for_format() (in module datalad.utils)

H

handle (datalad.utils.SwallowLogsAdapter property) handles (datalad.utils.SwallowOutputsAdapter property) has_config() (in module datalad.support.extensions) has_option() (datalad.config.ConfigManager method)

has_section() (datalad.config.ConfigManager method) has_symlink_capability() (in module datalad.tests.utils_pytest) HEAD_UPTODATE (datalad.support.gitrepo.FetchInfo attribute) HTTPPath (class in datalad.tests.utils_pytest)

I

ignore_nose_capturing_stdout() (in module datalad.tests.utils_pytest) import_module_from_file() (in module datalad.utils) import_modules() (in module datalad.utils) in_() (in module datalad.tests.utils_pytest) info() (datalad.support.annexrepo.AnnexRepo method) init_datalad_remote() (in module datalad.customremotes.base) init_remote() (datalad.support.annexrepo.AnnexRepo method) initremote() (datalad.customremotes.base.AnnexCustomRemote method) InnerSubmodule (class in datalad.tests.utils_testrepos) install() (in module datalad.api) integration() (in module datalad.tests.utils_pytest) Interface (class in datalad.interface.base) is_ancestor() (datalad.support.gitrepo.GitRepo method) is_api_arg() (in module datalad.interface.base) is_available() (datalad.support.annexrepo.AnnexRepo method) is_crippled_fs() (datalad.support.annexrepo.AnnexRepo method)

is_direct_mode() (datalad.support.annexrepo.AnnexRepo method) is_explicit_path() (in module datalad.utils) is_extracted (datalad.support.archives.ExtractedArchive property) is_initialized() (datalad.support.annexrepo.AnnexRepo method) is_interactive() (in module datalad.utils) is_managed_branch() (datalad.support.annexrepo.AnnexRepo method) is_remote_annex_ignored() (datalad.support.annexrepo.AnnexRepo method) is_special_annex_remote() (datalad.support.annexrepo.AnnexRepo method) is_stalled() (datalad.runner.nonasyncrunner.ThreadedRunner method) is_under_annex() (datalad.support.annexrepo.AnnexRepo method) is_valid_annex() (datalad.support.annexrepo.AnnexRepo method) is_valid_git() (datalad.support.gitrepo.GitRepo method) is_valid_repo() (datalad.support.annexrepo.AnnexRepo class method) (datalad.support.gitrepo.GitRepo class method) is_with_annex() (datalad.support.gitrepo.GitRepo method) items() (datalad.config.ConfigManager method)

J

join_cmdline() (in module datalad.utils)

K

keys() (datalad.config.ConfigManager method) keywords (datalad.utils.ArgSpecFake attribute) known_failure() (in module datalad.tests.utils_pytest) known_failure_direct_mode() (in module datalad.tests.utils_pytest)

known_failure_githubci_osx() (in module datalad.tests.utils_pytest) known_failure_githubci_win() (in module datalad.tests.utils_pytest) known_failure_osx() (in module datalad.tests.utils_pytest) known_failure_windows() (in module datalad.tests.utils_pytest) knows_annex() (in module datalad.utils)

L

line_profile() (in module datalad.utils) lines (datalad.utils.SwallowLogsAdapter property) link_file_load() (in module datalad.customremotes.archives) lmtime() (in module datalad.utils) load_interface() (in module datalad.interface.base)

localsync() (datalad.support.annexrepo.AnnexRepo method) lock_if_required() (in module datalad.utils) log_message() (datalad.tests.utils_pytest.SilentHTTPHandler method) log_progress() (in module datalad.log) LoggerHelper (class in datalad.log)

M

main() (in module datalad.cli.main) (in module datalad.customremotes.archives) make_tempfile() (in module datalad.utils) map_items() (in module datalad.utils) maybe_adjust_repo() (in module datalad.tests.utils_pytest) md5sum() (in module datalad.utils) merge() (datalad.support.gitrepo.GitRepo method) merge_annex() (datalad.support.annexrepo.AnnexRepo method) migrate_backend() (datalad.support.annexrepo.AnnexRepo method) module datalad.cli.exec datalad.cli.main datalad.cli.parser datalad.cli.renderer datalad.cmd datalad.config datalad.consts datalad.customremotes.archives datalad.customremotes.base datalad.interface.base datalad.log datalad.runner.nonasyncrunner datalad.runner.protocol datalad.support.annexrepo datalad.support.archives datalad.support.extensions datalad.support.gitrepo datalad.tests.heavyoutput datalad.tests.utils_pytest datalad.tests.utils_testrepos datalad.utils datalad.version

N

nadict() (in module datalad.cli.renderer) nagen (class in datalad.cli.renderer) neq_() (in module datalad.tests.utils_pytest) NestedDataset (class in datalad.tests.utils_testrepos) never_fail() (in module datalad.utils) NEW_HEAD (datalad.support.gitrepo.FetchInfo attribute) (datalad.support.gitrepo.PushInfo attribute) NEW_TAG (datalad.support.gitrepo.FetchInfo attribute) (datalad.support.gitrepo.PushInfo attribute)

no_annex() (in module datalad.api) NO_MATCH (datalad.support.gitrepo.PushInfo attribute) nok_() (in module datalad.tests.utils_pytest) nok_startswith() (in module datalad.tests.utils_pytest) normalize_path() (in module datalad.support.gitrepo) normalize_paths() (in module datalad.support.gitrepo) not_supported_on_windows() (in module datalad.utils) nothing_cm() (in module datalad.utils)

O

obtain() (datalad.config.ConfigManager method) obtain_write_permission() (in module datalad.utils) ok_() (in module datalad.tests.utils_pytest) ok_annex_get() (in module datalad.tests.utils_pytest) ok_archives_caches() (in module datalad.tests.utils_pytest) ok_broken_symlink() (in module datalad.tests.utils_pytest) ok_clean_git() (in module datalad.tests.utils_pytest) ok_endswith() (in module datalad.tests.utils_pytest) ok_exists() (in module datalad.tests.utils_pytest) ok_file_has_content() (in module datalad.tests.utils_pytest) ok_file_under_git() (in module datalad.tests.utils_pytest)

ok_generator() (in module datalad.tests.utils_pytest) ok_git_config_not_empty() (in module datalad.tests.utils_pytest) ok_good_symlink() (in module datalad.tests.utils_pytest) ok_startswith() (in module datalad.tests.utils_pytest) ok_symlink() (in module datalad.tests.utils_pytest) on_failure (datalad.interface.base.Interface attribute) OP_MASK (datalad.support.gitrepo.GitProgress attribute) open_r_encdetect() (in module datalad.utils) optional_args() (in module datalad.utils) options() (datalad.config.ConfigManager method) out (datalad.utils.SwallowLogsAdapter property) (datalad.utils.SwallowOutputsAdapter property)

P

parse_gitconfig_dump() (in module datalad.config) parser_add_common_opt() (in module datalad.cli.parser) parser_add_common_options() (in module datalad.cli.parser) parser_add_version_opt() (in module datalad.cli.parser) partition() (in module datalad.utils) patch_config() (in module datalad.tests.utils_pytest) path (datalad.support.archives.ArchivesCache property) (datalad.support.archives.ExtractedArchive property) (datalad.tests.utils_testrepos.InnerSubmodule property) (datalad.tests.utils_testrepos.TestRepo property) path_is_subpath() (in module datalad.utils) path_startswith() (in module datalad.utils) pipe_connection_lost() (datalad.cmd.BatchedCommandProtocol method) (datalad.runner.protocol.WitlessProtocol method) pipe_data_received() (datalad.cmd.BatchedCommandProtocol method) (datalad.runner.protocol.WitlessProtocol method) (datalad.support.annexrepo.AnnexInitOutput method) (datalad.support.annexrepo.AnnexJsonProtocol method) (datalad.support.annexrepo.GeneratorAnnexJsonNoStderrProtocol method) (datalad.support.gitrepo.GitProgress method) populate() (datalad.tests.utils_testrepos.BasicAnnexTestRepo method) (datalad.tests.utils_testrepos.BasicGitTestRepo method) (datalad.tests.utils_testrepos.NestedDataset method) (datalad.tests.utils_testrepos.SubmoduleDataset method) (datalad.tests.utils_testrepos.TestRepo method) posix_relpath() (in module datalad.utils)

precommit() (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) prepare() (datalad.customremotes.base.AnnexCustomRemote method) probe_known_failure() (in module datalad.tests.utils_pytest) proc1() (datalad.cmd.BatchedCommand method) proc_err (datalad.runner.protocol.WitlessProtocol attribute) (datalad.support.annexrepo.AnnexInitOutput attribute) (datalad.support.annexrepo.AnnexJsonProtocol attribute) (datalad.support.gitrepo.GitProgress attribute) proc_out (datalad.runner.protocol.WitlessProtocol attribute) (datalad.support.annexrepo.AnnexInitOutput attribute) (datalad.support.annexrepo.AnnexJsonProtocol attribute) (datalad.support.gitrepo.StdOutCaptureWithGitProgress attribute) process_exited() (datalad.runner.protocol.WitlessProtocol method) (datalad.support.annexrepo.AnnexJsonProtocol method) (datalad.support.annexrepo.GeneratorAnnexJsonNoStderrProtocol method) (datalad.support.gitrepo.GitProgress method) process_loop() (datalad.runner.nonasyncrunner.ThreadedRunner method) process_queue() (datalad.runner.nonasyncrunner.ThreadedRunner method) process_request() (datalad.cmd.BatchedCommand method) process_running() (datalad.cmd.BatchedCommand method) process_timeouts() (datalad.runner.nonasyncrunner.ThreadedRunner method) push() (datalad.support.gitrepo.GitRepo method) (in module datalad.api) push_() (datalad.support.gitrepo.GitRepo method) PushInfo (class in datalad.support.gitrepo) put_file_under_git() (in module datalad.tests.utils_pytest)

Q

quote_cmdlinearg() (in module datalad.utils)

quote_config() (in module datalad.config)

R

re_op_absolute (datalad.support.gitrepo.GitProgress attribute) re_op_relative (datalad.support.gitrepo.GitProgress attribute) read_csv_lines() (in module datalad.utils) read_file() (in module datalad.utils) readline() (datalad.cmd.ReadlineEmulator method) readline_json() (in module datalad.support.annexrepo) readline_rstripped() (in module datalad.cmd) ReadlineEmulator (class in datalad.cmd) readlines_until_ok_or_failed() (in module datalad.support.annexrepo) RECEIVING (datalad.support.gitrepo.GitProgress attribute) register_config() (in module datalad.support.extensions) REJECTED (datalad.support.gitrepo.FetchInfo attribute) (datalad.support.gitrepo.PushInfo attribute) reload() (datalad.config.ConfigManager method) REMOTE_FAILURE (datalad.support.gitrepo.PushInfo attribute) REMOTE_REJECTED (datalad.support.gitrepo.PushInfo attribute) remove() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.customremotes.base.AnnexCustomRemote method) (datalad.support.gitrepo.GitRepo method) (in module datalad.api) remove_branch() (datalad.support.gitrepo.GitRepo method) remove_file_number() (datalad.runner.nonasyncrunner.ThreadedRunner method) remove_process() (datalad.runner.nonasyncrunner.ThreadedRunner method) remove_remote() (datalad.support.gitrepo.GitRepo method)

remove_section() (datalad.config.ConfigManager method) rename_section() (datalad.config.ConfigManager method) REPO_CLASS (datalad.tests.utils_testrepos.BasicAnnexTestRepo attribute) (datalad.tests.utils_testrepos.BasicGitTestRepo attribute) (datalad.tests.utils_testrepos.TestRepo attribute) repo_info() (datalad.support.annexrepo.AnnexRepo method) repository_versions (datalad.support.annexrepo.AnnexRepo attribute) rerun() (in module datalad.api) RESOLVING (datalad.support.gitrepo.GitProgress attribute) result_filter (datalad.interface.base.Interface attribute) result_renderer (datalad.interface.base.Interface attribute) result_xfm (datalad.interface.base.Interface attribute) return_type (datalad.interface.base.Interface attribute) rewrite_url() (datalad.config.ConfigManager method) (in module datalad.config) rm_url() (datalad.support.annexrepo.AnnexRepo method) rmdir() (in module datalad.utils) rmtemp() (in module datalad.utils) rmtree() (in module datalad.utils) rotree() (in module datalad.utils) run() (datalad.runner.nonasyncrunner.ThreadedRunner method) (in module datalad.api) run_command() (in module datalad.runner.nonasyncrunner) run_procedure() (in module datalad.api) run_under_dir() (in module datalad.tests.utils_pytest)

S

SafeDelCloseMixin (class in datalad.cmd) save() (datalad.support.gitrepo.GitRepo method) (in module datalad.api) save_() (datalad.support.gitrepo.GitRepo method) saved_generator() (in module datalad.utils) sections() (datalad.config.ConfigManager method) send_result() (datalad.runner.protocol.GeneratorMixIn method) SequenceFormatter (class in datalad.utils) serve_path_via_http() (in module datalad.tests.utils_pytest) set() (datalad.config.ConfigManager method) set_annex_version() (in module datalad.tests.utils_pytest) set_date() (in module datalad.tests.utils_pytest) set_default_backend() (datalad.support.annexrepo.AnnexRepo method) set_gitattributes() (datalad.support.gitrepo.GitRepo method) set_groupwanted() (datalad.support.annexrepo.AnnexRepo method) set_level() (datalad.log.LoggerHelper method) set_metadata() (datalad.support.annexrepo.AnnexRepo method) set_metadata_() (datalad.support.annexrepo.AnnexRepo method) set_preferred_content() (datalad.support.annexrepo.AnnexRepo method) set_remote_dead() (datalad.support.annexrepo.AnnexRepo method) set_remote_url() (datalad.support.annexrepo.AnnexRepo method) (datalad.support.gitrepo.GitRepo method) setup_parser() (in module datalad.cli.parser) setup_parser_for_interface() (in module datalad.cli.parser) setup_parserarg_for_interface() (in module datalad.cli.parser) shell_completion() (in module datalad.api) shortened_repr() (in module datalad.utils) should_continue() (datalad.runner.nonasyncrunner.ThreadedRunner method) sibling siblings() (in module datalad.api) SilentHTTPHandler (class in datalad.tests.utils_pytest) single_subparser_possible() (in module datalad.cli.parser) skip_if() (in module datalad.tests.utils_pytest) skip_if_adjusted_branch() (in module datalad.tests.utils_pytest) skip_if_no_module() (in module datalad.tests.utils_pytest)

skip_if_no_network() (in module datalad.tests.utils_pytest) skip_if_on_windows() (in module datalad.tests.utils_pytest) skip_if_root() (in module datalad.tests.utils_pytest) skip_if_scrapy_without_selector() (in module datalad.tests.utils_pytest) skip_if_url_is_not_available() (in module datalad.tests.utils_pytest) skip_known_failure() (in module datalad.tests.utils_pytest) skip_nomultiplex_ssh() (in module datalad.tests.utils_pytest) skip_ssh() (in module datalad.tests.utils_pytest) skip_wo_symlink_capability() (in module datalad.tests.utils_pytest) slash_join() (in module datalad.utils) slow() (in module datalad.tests.utils_pytest) split_cmdline() (in module datalad.utils) sshrun() (in module datalad.api) STAGE_MASK (datalad.support.gitrepo.GitProgress attribute) stamp_path (datalad.support.archives.ExtractedArchive property) STAMP_SUFFIX (datalad.support.archives.ExtractedArchive attribute) start() (datalad.tests.utils_pytest.HTTPPath method) status() (datalad.support.gitrepo.GitRepo method) (in module datalad.api) StdOutCaptureWithGitProgress (class in datalad.support.gitrepo) stop() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.tests.utils_pytest.HTTPPath method) subdataset subdatasets() (in module datalad.api) SubmoduleDataset (class in datalad.tests.utils_testrepos) success (datalad.support.gitrepo.GitAddOutput attribute) superdataset SUPPORTED_SCHEMES (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) supports_direct_mode (datalad.support.annexrepo.AnnexRepo attribute) supports_unlocked_pointers (datalad.support.annexrepo.AnnexRepo property) swallow_logs() (in module datalad.utils) swallow_outputs() (in module datalad.utils) SwallowLogsAdapter (class in datalad.utils) SwallowOutputsAdapter (class in datalad.utils) sync() (datalad.support.annexrepo.AnnexRepo method)

T

tag() (datalad.support.gitrepo.GitRepo method) TAG_UPDATE (datalad.support.gitrepo.FetchInfo attribute) TestRepo (class in datalad.tests.utils_testrepos) ThreadedRunner (class in datalad.runner.nonasyncrunner) timeout() (datalad.cmd.BatchedCommandProtocol method) (datalad.runner.protocol.WitlessProtocol method) timeout_resolution (datalad.runner.nonasyncrunner.ThreadedRunner attribute) to_options() (in module datalad.support.gitrepo)

todo_interface_for_extensions() (in module datalad.utils) TOKEN_SEPARATOR (datalad.support.gitrepo.GitProgress attribute) transfer_retrieve() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) transfer_store() (datalad.customremotes.base.AnnexCustomRemote method) try_multiple() (in module datalad.utils) try_multiple_dec() (in module datalad.utils) try_suggest_extension_with_command() (in module datalad.cli.parser) turtle() (in module datalad.tests.utils_pytest)

U

unannex() (datalad.support.annexrepo.AnnexRepo method) unique() (in module datalad.utils) unlink() (in module datalad.utils) unlock() (datalad.support.annexrepo.AnnexRepo method) (in module datalad.api) unset() (datalad.config.ConfigManager method) untracked_files (datalad.support.gitrepo.GitRepo property) UP_TO_DATE (datalad.support.gitrepo.PushInfo attribute) update() (in module datalad.api) update_docstring_with_examples() (in module datalad.interface.base)

update_docstring_with_parameters() (in module datalad.interface.base) update_ref() (datalad.support.gitrepo.GitRepo method) update_remote() (datalad.support.gitrepo.GitRepo method) updated() (in module datalad.utils) url (datalad.tests.utils_testrepos.InnerSubmodule property) (datalad.tests.utils_testrepos.TestRepo property) URL_PREFIX (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) URL_SCHEME (datalad.customremotes.archives.ArchiveAnnexCustomRemote attribute) usecase() (in module datalad.tests.utils_pytest) uuid (datalad.support.annexrepo.AnnexRepo property)

V

varargs (datalad.utils.ArgSpecFake attribute)

W

wait_for_threads() (datalad.runner.nonasyncrunner.ThreadedRunner method) warn_on_undefined_git_identity() (in module datalad.config) WEB_UUID (datalad.support.annexrepo.AnnexRepo attribute) whereis() (datalad.customremotes.archives.ArchiveAnnexCustomRemote method) (datalad.support.annexrepo.AnnexRepo method) with_fake_cookies_db() (in module datalad.tests.utils_pytest) with_memory_keyring() (in module datalad.tests.utils_pytest) with_pathsep() (in module datalad.utils) with_progress() (in module datalad.log)

with_result_progress() (in module datalad.log) with_sameas_remote() (in module datalad.tests.utils_pytest) with_tempfile() (in module datalad.tests.utils_pytest) with_testsui() (in module datalad.tests.utils_pytest) with_tree() (in module datalad.tests.utils_pytest) without_http_proxy() (in module datalad.tests.utils_pytest) WitlessProtocol (class in datalad.runner.protocol) write_config_section() (in module datalad.config) WRITING (datalad.support.gitrepo.GitProgress attribute) wtf() (in module datalad.api)